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Living with X-linked lissencephaly with abnormal genitalia

A condition mostly in males in which the brain has a smooth surface, causing seizures and severe delay, along with differences in the genitals.

Understanding X-linked lissencephaly with abnormal genitalia

X-linked lissencephaly with abnormal genitalia (XLAG) is a condition that affects the development of the brain and genitals.

Lissencephaly means the brain looks smooth instead of having normal folds and grooves. It can cause severe intellectual disability, developmental delay, muscle stiffness or low tone, and feeding difficulties. Frequent seizures start soon after birth. Males can have a small penis, undescended testes, or genitals that don't look clearly male or female. Chronic diarrhea and trouble regulating body temperature can also occur.

Signs & symptoms

Symptoms vary from person to person. GARD lists these among the most common:

  • Smooth brain surface (lissencephaly)
  • Seizures
  • Severe developmental delay
  • Low muscle tone
  • Differences in the genitals
  • Small head size

Not everyone has every symptom. GARD's list comes from the Human Phenotype Ontology.

Diagnosis

  1. Talk with your doctor

    Share the symptoms you've noticed, when they started and your family health history. Notes and photos can help.

  2. See a specialist

    Specialists who may be involved include brain and nervous system specialists, genetic specialists, hormone specialists and seizure and epilepsy specialists.

  3. Consider genetic testing

    Changes in ARX are linked to this condition. Genetic testing and counseling can help confirm a diagnosis and explain what it means for your family.

  4. Connect with expert centers

    Epilepsy Foundation may keep lists of experts for this condition.

Care & treatment

Care team
Brain and nervous system specialists (neurologists); Genetic specialists (geneticists); Hormone specialists (endocrinologists); Seizure and epilepsy specialists (epileptologist)
Expert care
Expert lists: Epilepsy Foundation
Treatment
GARD doesn't list specific treatments for this condition. Your care team will tailor care to your symptoms.
Research
Clinical trials and observational studies may be options. See the research section below.

General information, not medical advice. Your care team makes the decisions.

Everyday life

Living with a rare condition is easier with support.

  • Connect with National Organization of Disorders of the Corpus Callosum and other patient organizations
  • Keep notes on symptoms, changes and questions for appointments
  • Ask about patient registries that help research
  • Look into financial aid and travel resources for care visits
Bring these questions to your next doctor visit
Could ARX genetic testing confirm the diagnosis?
How can seizures and feeding be managed?
Which specialists should be on my child's care team?

Quick facts

Symptoms usually startNewborn
InheritanceX-Linked
GenesARX

XLAG is caused by changes in the ARX gene and follows X-linked inheritance.

GeneticNeurologicalEndocrineUrinary and Reproductive

Also known as: lissencephaly, x-linked, type 2; x-linked lissencephaly with abnormal genitalia syndrome; x-linked lissencephaly with agenesis of corpus callosum and genital anomaly syndrome; x-linked lissencephaly with ambiguous genitalia; x-linked lissencephaly-agenesis of the corpus callosum-genital anomalies syndrome; x-linked lissencephaly-corpus callosum agenesis-genital anomalies syndrome

Patient organizations

Source: NIH GARD · X-linked lissencephaly with abnormal genitaliaGARD ID 12491 · GARD page updated September 2026 · Plain-language summary by Know Rare; editorial review pending. General information, not medical advice.

You are more than your diagnosis

Perspectives from people navigating life with X-linked lissencephaly with abnormal genitalia.

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