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Living with Partial chromosome Y deletion

A genetic change that can severely reduce sperm production and is a common genetic cause of male infertility.

Understanding Partial chromosome Y deletion

Partial chromosome Y deletion is a genetic cause of male infertility in which part of the Y chromosome is missing.

The missing piece leads to a severe shortage of sperm production (spermatogenesis). Chromosome Y deletions are a frequent genetic cause of male infertility. It is typically noticed in adulthood.

Signs & symptoms

Symptoms vary from person to person. GARD lists these among the most common:

  • Infertility
  • Low sperm count (oligozoospermia)
  • No sperm in semen (azoospermia)
  • Small testes
  • Abnormal sperm production

Not everyone has every symptom. GARD's list comes from the Human Phenotype Ontology.

Diagnosis

  1. Talk with your doctor

    Share the symptoms you've noticed, when they started and your family health history. Notes and photos can help.

  2. See a specialist

    Specialists who may be involved include genetic specialists and urinary and male reproductive system specialists.

  3. Ask which tests can help

    Your care team will decide which exams and tests can confirm the diagnosis.

  4. Connect with expert centers

    Resolve: The National Infertility Association may keep lists of experts for this condition.

Care & treatment

Care team
Genetic specialists (geneticists); Urinary and male reproductive system specialists (urologists)
Expert care
Expert lists: Resolve: The National Infertility Association
Treatment
GARD doesn't list specific treatments for this condition. Your care team will tailor care to your symptoms.
Research
Clinical trials and observational studies may be options. See the research section below.

General information, not medical advice. Your care team makes the decisions.

Everyday life

Living with a rare condition is easier with support.

  • Connect with Chromosome Disorder Outreach and other patient organizations
  • Keep notes on symptoms, changes and questions for appointments
  • Ask about patient registries that help research
  • Look into financial aid and travel resources for care visits
Bring these questions to your next doctor visit
Which tests confirm a Y chromosome deletion?
What fertility options are available to us?
Could this be passed to a son?

Quick facts

Symptoms usually startAdult

Changes in the genes (also called variants) cause this condition. The cause is a deletion, which means a piece of the Y chromosome is missing.

Genetic

Also known as: male sterility due to chromosome y deletion; partial deletion of chromosome y

Patient organizations

Source: NIH GARD · Partial chromosome Y deletionGARD ID 16574 · GARD page updated September 2026 · Plain-language summary by Know Rare; editorial review pending. General information, not medical advice.

You are more than your diagnosis

Perspectives from people navigating life with Partial chromosome Y deletion.

Explore the Partial chromosome Y deletion blog

Explore research for Partial chromosome Y deletion

Explore actively recruiting Partial chromosome Y deletion studies with HealthSpark.

HealthSpark

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  • Eligibility is confirmed by the study team

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