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Living with Multiple congenital anomalies-hypotonia-seizures syndrome 1

A rare genetic syndrome with low muscle tone, seizures, delayed development, and differences present from birth, linked to the PIGN gene.

Understanding Multiple congenital anomalies-hypotonia-seizures syndrome 1

Multiple congenital anomalies-hypotonia-seizures syndrome 1 is a rare genetic syndrome caused by changes in the PIGN gene.

GARD describes it as a multiple congenital anomalies syndrome with intellectual disability. Features include severely low muscle tone, seizures, severe global developmental delay, and feeding difficulties in infancy. Other features include coarse facial features, a large head at birth, eye movement problems, and delayed myelination (the coating on nerves). Signs are seen during pregnancy, at birth, or in infancy.

Signs & symptoms

Symptoms vary from person to person. GARD lists these among the most common:

  • Severely low muscle tone (hypotonia)
  • Seizures
  • Severe developmental delay
  • Feeding difficulties and acid reflux
  • Rapid eye movements (nystagmus) and eyes that turn
  • Coarse facial features

Not everyone has every symptom. GARD's list comes from the Human Phenotype Ontology.

Diagnosis

  1. Talk with your doctor

    Share the symptoms you've noticed, when they started and your family health history. Notes and photos can help.

  2. See a specialist

    Specialists who may be involved include brain and nervous system specialists, genetic specialists and seizure and epilepsy specialists.

  3. Consider genetic testing

    Changes in PIGN are linked to this condition. Genetic testing and counseling can help confirm a diagnosis and explain what it means for your family.

  4. Connect with expert centers

    Epilepsy Foundation may keep lists of experts for this condition.

Care & treatment

Care team
Brain and nervous system specialists (neurologists); Genetic specialists (geneticists); Seizure and epilepsy specialists (epileptologist)
Expert care
Expert lists: Epilepsy Foundation
Treatment
GARD doesn't list specific treatments for this condition. Your care team will tailor care to your symptoms.
Research
Clinical trials and observational studies may be options. See the research section below.

General information, not medical advice. Your care team makes the decisions.

Everyday life

Living with a rare condition is easier with support.

  • Connect with CDG & Allies - PPAIN
  • Keep notes on symptoms, changes and questions for appointments
  • Ask about patient registries that help research
  • Look into financial aid and travel resources for care visits
Bring these questions to your next doctor visit
Can genetic testing for the PIGN gene confirm this diagnosis?
What seizure treatments are available?
What feeding supports and therapies can help my child?

Quick facts

Symptoms usually startduring Pregnancy, at Birth, and as an Infant
InheritanceAutosomal Recessive
GenesPIGN

This syndrome is caused by changes in the PIGN gene. It is autosomal recessive, which means a child inherits a changed copy of the gene from each parent.

GeneticNeurologicalInherited Metabolic

Also known as: congenital disorder of glycosylation due to pign deficiency; glycosylphosphatidylinositol biosynthesis defect 3; inherited gpi anchor-deficiency; mcahs1; multiple congenital anomalies-hypotonia-seizures syndrome type 1; multiple congenital anomalies/dysmorphic syndrome-intellectual disability caused by mutation in pign

Patient organizations

  • CDG & Allies - PPAINMultiple congenital anomalies-hypotonia-seizures syndrome 1 · Epilepsy Foundation
Source: NIH GARD · Multiple congenital anomalies-hypotonia-seizures syndrome 1GARD ID 12781 · GARD page updated September 2026 · Plain-language summary by Know Rare; editorial review pending. General information, not medical advice.

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